Based on cross-validation experiments, the SVM is expected to classify unseen test cases with 90.86% accuracy. It classifies 262 out of our 271 training cases correctly (96.7%). Here is a breakdown of the SVM's performance in cross-validation.
| TP Rate | FP Rate | Precision | Recall | Class |
| 0.845 | 0.042 | 0.926 | 0.845 | cxcr4 |
| 0.958 | 0.155 | 0.91 | 0.958 | ccr5 |
"Machine linear: showing nonzero attribute weights, not support vectors." Number of support vectors: 79 Number of kernel evaluations: 22062 Time taken to build model: 0.7 seconds 0.895000795 p2=T 0.736459152 p27=T 0.708303529 p12=S 0.662104364 p11=N 0.647060832 p12=G 0.572160628 p7=N 0.570478701 p5=S 0.533866651 p27=N 0.491774385 p15=M 0.477473453 p8=S 0.477473453 p22=R 0.477473453 p25=V 0.463273995 p14=N 0.460074464 p28=N 0.424271377 p25=T 0.423955322 p28=K 0.421788041 p9=- 0.406886755 p32=T 0.391900106 p6=N 0.359571839 p23=F 0.346113192 p21=G 0.319556947 p29=D 0.306960717 p2=I 0.288184696 p30=I 0.282948775 p21=Q 0.27735577 p8=T 0.276909868 p22=T 0.266211762 p24=Y 0.257947931 p39=Q 0.241008886 p29=E 0.227260376 p14=H 0.219680244 p22=S 0.194849613 p11=T 0.187837421 p19=L 0.187361351 p19=P 0.172666823 p34=D 0.167529837 p16=- 0.166667061 p14=R 0.16289093 p23=M 0.155397662 p11=Q 0.148479667 p10=G 0.148479667 p11=G 0.148479667 p12=Q 0.148479667 p14=Q 0.148479667 p20=A 0.148479667 p21=M 0.148479667 p25=N 0.140467505 p23=L 0.13881666 p19=W 0.125511414 p37=Q 0.122999276 p13=T 0.114426177 p13=V 0.105070446 p35=I 0.10452379 p24=H 0.104125357 p24=M 0.104125357 p25=Q 0.104125357 p27=Q 0.104125357 p30=E 0.104125357 p33=D 0.104125357 p34=- 0.104125357 p35=- 0.104125357 p36=- 0.104125357 p37=- 0.104125357 p38=K 0.104125357 p40=I 0.103870007 p25=A 0.096191933 p14=P 0.094824223 p14=S 0.090545618 p29=K 0.059770731 p29=Q 0.05678193 p25=R 0.054246445 p23=Y 0.050812773 p5=Y 0.045948914 p33=G 0.045784405 p2=V 0.041043573 p34=N 0.034691303 p25=S 0.034691303 p30=L 0.034490915 p22=A 0.007967432 p5=I 0.007967432 p11=W 5.87E-04 p28=G 4.76E-16 p18=G 4.21E-16 p3=R 5.90E-17 p36=K 5.72E-17 p8=E 5.72E-17 p10=T 5.72E-17 p16=H 5.72E-17 p19=Y 5.72E-17 p27=V 5.72E-17 p35=R 5.55E-17 p32=L 4.16E-17 p13=F 2.08E-17 p37=E 1.39E-17 p8=V 1.39E-17 p18=S 8.24E-18 p24=L 8.24E-18 p28=Q 8.24E-18 p30=T 7.81E-18 p6=E 7.81E-18 p9=K 6.94E-18 p15=F 6.07E-18 p29=I 3.25E-18 p36=G -8.67E-19 p10=I -3.47E-18 p11=E -6.94E-18 p25=K -1.39E-17 p1 -1.39E-17 p10=X -1.39E-17 p27=- -2.08E-17 p21=S -4.34E-17 p3=N -4.34E-17 p4 -0.007324609 p15=I -0.013553712 p10=R -0.019437776 p27=I -0.020668753 p21=Y -0.020997213 p21=H -0.028007782 p5=A -0.028007782 p15=T -0.032398386 p6=S -0.032398386 p7=K -0.032398386 p9=E -0.032398386 p11=L -0.032398386 p29=V -0.032398386 p30=K -0.032398386 p31 -0.032398386 p12=K -0.034916831 p29=R -0.035055262 p32=V -0.036223318 p5=F -0.041665966 p7=- -0.041665966 p11=I -0.041665966 p13=M -0.041665966 p15=R -0.041665966 p35=P -0.048976643 p29=N -0.052865288 p37=R -0.08273707 p13=L -0.083828886 p23=S -0.083949094 p23=W -0.087313084 p2=A -0.087884103 p5=N -0.088179718 p34=Y -0.088179718 p6=K -0.088179718 p27=L -0.088179718 p29=G -0.089639838 p23=I -0.095324274 p32=I -0.102161811 p39=H -0.103223088 p8=K -0.103223088 p34=T -0.104125357 p36=R -0.104125357 p38=A -0.104125357 p40=C -0.113022417 p13=I -0.126368029 p7=T -0.126432948 p6=H -0.126432948 p25=- -0.126432948 p32=K -0.126432948 p34=S -0.134925955 p10=S -0.134925955 p24=R -0.134925955 p29=- -0.135250856 p7=P -0.144889054 p6=Y -0.14608651 p15=L -0.148479667 p20=G -0.150074271 p9=I -0.150074271 p32=- -0.150074271 p33=E -0.15578612 p39=Y -0.167529837 p16=Q -0.167529837 p17 -0.167529837 p24=V -0.167529837 p30=- -0.167529837 p35=M -0.168400266 p2=S -0.172405117 p24=F -0.173198062 p28=- -0.176771483 p37=K -0.182472657 p8=- -0.214411808 p14=T -0.22328151 p23=V -0.227073132 p30=V -0.236477391 p7=Y -0.236477391 p12=X -0.236477391 p14=X -0.236477391 p22=X -0.236477391 p23=X -0.238994914 p21=R -0.239315383 p9=Q -0.239315383 p12=I -0.255679896 p19=Q -0.258335536 p19=S -0.268689519 p15=K -0.331074973 p11=K -0.35555421 p28=E -0.355864517 p28=R -0.371484649 p29=A -0.469133478 p8=I -0.477143704 p5=G -0.496880754 p21=K -0.616551519 p27=M -0.650282148 p27=A -0.745808057 p14=Y -0.763659414 p11=R -0.772077089 p22=V -0.992032568 p2=P -0.995652868 p12=R -1.223260146 p25=G