Determination of HIV-1 Coreceptor Usage via the charge rule

The rule goes:

If there is a positively charged amino acid at position 11 or 25 (according to public consensus - 12 and 29 in our alignment), then predict cxcr4, otherwise predict ccr5. The positively charged amino acids are R Arginine, K Lysine, and H Histidine.

The charge rule classifies our datset with 87.45% accuracy. It correctly classifies 237 out of our 271 test cases. Here is a breakdown of the the charge rule's class specific performance.

TP Rate FP Rate Precision Recall Class
0.757 0.054 0.897 0.757 cxcr4
0.946 0.243 0.864 0.946 ccr5